As of December 29, 2016.
| Water body name | County or counties | Listed for aquatic invasive species | Year listed as infested |
| Adley | Otter Tail | zebra mussel | 2016 |
| Adley Creek from Big Birch to the Sauk River | Todd and Stearns | zebra mussel | 2016 |
| Alexander | Morrison | Eurasian watermilfoil | 2004 |
| Alice | Washington | Eurasian watermilfoil | 2013 |
| Alimagnet | Dakota | Eurasian watermilfoil | 2014 |
| Alvin | Douglas | zebra mussel | 2009 |
| Amelia | Anoka | flowering rush | 2014 |
| Anderson’s Marsh | Jackson | bighead carp | 2012 |
| Anderson’s Marsh | Jackson | silver carp | 2012 |
| Andrew | Douglas | zebra mussel | 2016 |
| Andrusia | Beltrami | zebra mussel | 2014 |
| Ann | Carver | Eurasian watermilfoil | 1995 |
| Arbor North (NW 1/4, SW 1/4, S23, T119N, R22W) | Hennepin | Eurasian watermilfoil | 2006 |
| Arbor South (S 1/2, SW 1/4, S23, T119N, R22W) | Hennepin | Eurasian watermilfoil | 2006 |
| Arbor West | Hennepin | Eurasian watermilfoil | 2006 |
| Arrowhead | Crow Wing | zebra mussel | 2014 |
| Arrowhead | Hennepin | Eurasian watermilfoil | 1996 |
| Artlip | Lake | zebra mussel | 2014 |
| Ash River downstream of the northern section line of S8 T68N, R19W | St. Louis | spiny waterflea | 2007 |
| Auburn | Carver | Eurasian watermilfoil | 1995 |
| Augusta | Multiple (Stearns and Wright) | zebra mussel | 2015 |
| Augusta | Wright | Eurasian watermilfoil | 1995 |
| Bald Eagle | Ramsey | Eurasian watermilfoil | 1995 |
| Bald Eagle | Ramsey | flowering rush | 2014 |
| Ballantyne | Blue Earth | Eurasian watermilfoil | 2013 |
| Bass | Anoka | flowering rush | 2014 |
| Bass | Hennepin | Eurasian watermilfoil | 1998 |
| Bass | Otter Tail | zebra mussel | 2009 |
| Bass (or Ray) | Cass | zebra mussel | 2010 |
| Basswood | Lake | spiny waterflea | 2014 |
| Basswood River between Basswood Lake and Crooked Lake | Lake | spiny waterflea | 2014 |
| Baudette River from 500 feet upstream of Highway 11 downstream to the Rainy River | Lake of the Woods | spiny waterflea | 2007 |
| Bavaria | Carver | Eurasian watermilfoil | 1995 |
| Bay | Crow Wing | Eurasian watermilfoil | 1995 |
| Bear | Carlton | Eurasian watermilfoil | 2015 |
| Beaver | Ramsey | Eurasian watermilfoil | 2005 |
| Beebe | Wright | Eurasian watermilfoil | 1995 |
| Bertha | Crow Wing | zebra mussel | 2014 |
| Big | Sherburne | Eurasian watermilfoil | 2007 |
| Big Birch | Todd and Stearns | zebra mussel | 2016 |
| Big Cormorant | Becker | zebra mussel | 2015 |
| Big Fork River from 500 feet upstream of the public water access on Highway 11 downstream to the Rainy River | Koochiching | spiny waterflea | 2007 |
| Big Marine | Washington | Eurasian watermilfoil | 2005 |
| Big Pine | Crow Wing | zebra mussel | 2014 |
| Big Rice | Beltrami | zebra mussel | 2014 |
| Big Sandy | Aitkin | flowering rush | 2009 |
| Big Trout | Crow Wing | zebra mussel | 2014 |
| Birch | Ramsey | Eurasian watermilfoil | 2006 |
| Bird’s Eye | Itasca | zebra mussel | 2013 |
| Bishop Creek between North Long and Round (also known as Sugar Bush Creek) | Crow Wing | zebra mussel | 2015 |
| Bishop Creek between Round and Gull (located in S35, T135N, R29W) | Crow Wing | zebra mussel | 2010 |
| Black Bear | Crow Wing | zebra mussel | 2006 |
| Black River, the south branch downstream of Highway 11 and the west branch downstream of Highway 147 | Koochiching | spiny waterflea | 2007 |
| Blackwater | Itasca | faucet snail | 2016 |
| Bone | Washington | Eurasian watermilfoil | 2007 |
| Boom | Crow Wing | zebra mussel | 2006 |
| Bottle | St. Louis | spiny waterflea | 2014 |
| Bottle River between Bottle Lake and Lac La Croix | St. Louis | spiny waterflea | 2014 |
| Bowstring | Itasca | faucet snail | 2015 |
| Bowstring River from Sand downstream to Rice | Itasca | zebra mussel | 2013 |
| Breckenridge | Wilkin | zebra mussel | 2013 |
| Bridge | Dakota | Eurasian watermilfoil | 2016 |
| Brophy | Douglas | zebra mussel | 2011 |
| Brownie | Hennepin | Eurasian watermilfoil | 1995 |
| Bryant | Hennepin | Eurasian watermilfoil | 1995 |
| Bryant | Hennepin | zebra mussel | 2015 |
| Buck | Becker | flowering rush | 2009 |
| Buck | Becker | zebra mussel | 2012 |
| Buck | Beltrami | zebra mussel | 2014 |
| Bucks Mill Pond (Minnow Pond) | Becker | zebra mussel | 2014 |
| Buffalo | Wright | Eurasian watermilfoil | 1999 |
| Burandt | Carver | Eurasian watermilfoil | 2004 |
| Burntside | St. Louis | spiny waterflea | 2010 |
| Burntside River between Burntside and Shagawa | St. Louis | spiny waterflea | 2010 |
| Bush | Hennepin | Eurasian watermilfoil | 1995 |
| Byllesby | Dakota | flowering rush | 2016 |
| Calhoun | Hennepin | Eurasian watermilfoil | 1995 |
| Calhoun | Kandiyohi | Eurasian watermilfoil | 2010 |
| Calhoun | Kandiyohi | zebra mussel | 2014 |
| Camp | Wright | Eurasian watermilfoil | 2013 |
| Camp Galilee | Washington | Eurasian watermilfoil | 2007 |
| Cannon | Rice | flowering rush | 2007 |
| Cannon River from Wells Lower Sakatah to the confluence with the Straight River | Multiple (Goodhue and Rice) | flowering rush | 2007 |
| Caribou (in the Boundary Waters Canoe Area, just west of Pine) | Cook | spiny waterflea | 2007 |
| Carlos | Douglas | Eurasian watermilfoil | 2012 |
| Carlos | Douglas | zebra mussel | 2009 |
| Caroline | Wright | Eurasian watermilfoil | 2009 |
| Cass | Beltrami | zebra mussel | 2014 |
| Cass | Beltrami | starry stonewort | 2016 |
| Cate’s | Scott | Eurasian watermilfoil | 2007 |
| Cedar | Hennepin | Eurasian watermilfoil | 1995 |
| Cedar | McLeod | Eurasian watermilfoil | 2013 |
| Cedar | Rice | Eurasian watermilfoil | 2001 |
| Cedar | Wright | Eurasian watermilfoil | 2010 |
| Cenaiko | Anoka | Eurasian watermilfoil | 1995 |
| Centerville | Anoka | Eurasian watermilfoil | 1999 |
| Charley | Douglas | zebra mussel | 2014 |
| Charley | Ramsey | zebra mussel | 2007 |
| Charlotte | Wright | Eurasian watermilfoil | 2014 |
| Chisago | Chisago | Eurasian watermilfoil | 2010 |
| Christmas | Hennepin | Eurasian watermilfoil | 1995 |
| Christmas | Hennepin | zebra mussel | 2014 |
| Chub | Carlton | Eurasian watermilfoil | 2009 |
| Circle | Rice | Eurasian watermilfoil | 2011 |
| Clamshell | Crow Wing | zebra mussel | 2014 |
| Clear | Jackson | bighead carp | 2012 |
| Clear | Jackson | silver carp | 2012 |
| Clear | Meeker | Eurasian watermilfoil | 2014 |
| Clear | Waseca | Eurasian watermilfoil | 2006 |
| Clear | Washington | Eurasian watermilfoil | 2007 |
| Clearwater | Crow Wing | Eurasian watermilfoil | 2011 |
| Clearwater | Multiple (Wright and Stearns) | zebra mussel | 2015 |
| Clearwater | Wright | Eurasian watermilfoil | 1995 |
| Clearwater River downstream of Clearwater, including 500 feet upstream into its tributaries | Wright | Eurasian watermilfoil | 1999 |
| Clearwater River from Clearwater Lake to the Mississippi River | Multiple (Stearns and Wright) | zebra mussel | 2015 |
| Cloquet River from Island Lake to the St. Louis River | St. Louis | spiny waterflea | 1995 |
| Cobblestone | Dakota | Eurasian watermilfoil | 2012 |
| Colby | Washington | Eurasian watermilfoil | 2012 |
| Comfort | Chisago | Eurasian watermilfoil | 2014 |
| Constance | Wright | Eurasian watermilfoil | 2016 |
| Coon | Anoka | Eurasian watermilfoil | 2004 |
| Coon-Sandwick | Itasca | Eurasian watermilfoil | 2014 |
| County ditches connected to designated infested waters in Jackson County | Jackson | bighead carp | 2012 |
| County ditches connected to designated infested waters in Jackson County | Jackson | silver carp | 2012 |
| Courthouse | Carver | Eurasian watermilfoil | 2016 |
| Cowdry (Cowdrey) | Douglas | zebra mussel | 2011 |
| Crane | St. Louis | spiny waterflea | 2007 |
| Crooked | Anoka | Eurasian watermilfoil | 1995 |
| Crooked | Lake | spiny waterflea | 2014 |
| Crooked | Lake | zebra mussel | 2014 |
| Cross | Crow Wing | zebra mussel | 2014 |
| Cross | Pine | Eurasian watermilfoil | 2005 |
| Crow Wing River downstream of the confluence with the Long Prairie River to the Mississippi River | Multiple (Cass and Morrison counties) | zebra mussel | 2009 |
| Crow Wing River from Highway 87 in Hubbard County downstream to the confluence with the Mississippi River, including 500 feet upstream into its tributaries | Multiple (Cass, Hubbard, Morrison, Todd and Wadena) | faucet snail | 2010 |
| Crystal | Dakota | Eurasian watermilfoil | 1995 |
| Crystal | Otter Tail | zebra mussel | 2009 |
| Curfman (Deadshot Bay) | Becker | flowering rush | 2007 |
| Cut Foot Sioux | Itasca | faucet snail | 2009 |
| Cut Foot Sioux | Itasca | zebra mussel | 2013 |
| Daggett | Crow Wing | zebra mussel | 2014 |
| Darling | Douglas | zebra mussel | 2009 |
| Dayton Hollow Reservoir | Otter Tail | zebra mussel | 2013 |
| Dead River | St. Louis | spiny waterflea | 2010 |
| Deer | Wright | Eurasian watermilfoil | 2000 |
| DeMontreville | Washington | Eurasian watermilfoil | 2009 |
| Detroit | Becker | flowering rush | 2007 |
| Detroit | Becker | zebra mussel | 2016 |
| Devil Track | Cook | spiny waterflea | 2008 |
| Devilfish | Cook | spiny waterflea | 2016 |
| Dutch | Hennepin | Eurasian watermilfoil | 1995 |
| Dutch | Wright | Eurasian watermilfoil | 2016 |
| Eagle | Carver | Eurasian watermilfoil | 2001 |
| Eagle | Sherburne | Eurasian watermilfoil | 2006 |
| Eagle (includes North and South Eagle) | Blue Earth | Eurasian watermilfoil | 2015 |
| Eagle (includes Pike) | Hennepin | Eurasian watermilfoil | 1995 |
| Earley | Dakota | Eurasian watermilfoil | 2006 |
| East Jefferson (DOW 40-0092-01) | Le Sueur | Eurasian watermilfoil | 2004 |
| East Spirit | Otter Tail | zebra mussel | 2016 |
| East Sylvia | Wright | Eurasian watermilfoil | 2008 |
| East Sylvia | Wright | zebra mussel | 2016 |
| East Twin | St. Louis | spiny waterflea | 2010 |
| Edina Mill Pond | Hennepin | zebra mussel | 2010 |
| Egg | Itasca | faucet snail | 2009 |
| Egg | Itasca | zebra mussel | 2013 |
| Ellen | Chisago | Eurasian watermilfoil | 1999 |
| Elmo | Washington | Eurasian watermilfoil | 2006 |
| Emily | Crow Wing | Eurasian watermilfoil | 2014 |
| Emily | Pope | Eurasian watermilfoil | 2014 |
| Emily | Pope | zebra mussel | 2012 |
| Emma | Wright | Eurasian watermilfoil | 2007 |
| Erie | Meeker | Eurasian watermilfoil | 2014 |
| Eunice | Becker | zebra mussel | 2015 |
| Faille | Todd | zebra mussel | 2016 |
| Fall | Lake | spiny waterflea | 2014 |
| Firemen’s | Carver | Eurasian watermilfoil | 1997 |
| First Crow Wing | Hubbard | faucet snail | 2011 |
| First River Lake | Itasca | faucet snail | 2009 |
| First River Lake | Itasca | zebra mussel | 2013 |
| Fish | Chisago | Eurasian watermilfoil | 2007 |
| Fish | Dakota | Eurasian watermilfoil | 2009 |
| Fish | Hennepin | Eurasian watermilfoil | 1995 |
| Fish | Otter Tail | zebra mussel | 2009 |
| Fish | St. Louis | spiny waterflea | 1995 |
| Fish | Wright | Eurasian watermilfoil | 2004 |
| Fish | Wright | zebra mussel | 2006 |
| Fish Trap | Morrison | zebra mussel | 2015 |
| Fish Trap Creek from Fish Trap Lake to the Long Prairie River | Multiple (Morrison and Todd) | zebra mussel | 2015 |
| Florida | Kandiyohi | Eurasian watermilfoil | 2009 |
| Florida | Kandiyohi | zebra mussel | 2016 |
| Flour | Cook | spiny waterflea | 2005 |
| Forest | Hennepin | Eurasian watermilfoil | 1995 |
| Forest | Hennepin | zebra mussel | 2012 |
| Forest | Washington | Eurasian watermilfoil | 2015 |
| Forest | Washington | flowering rush | 2007 |
| Forest | Washington | zebra mussel | 2015 |
| Fox | Rice | Eurasian watermilfoil | 2009 |
| Franklin | Otter Tail | zebra mussel | 2016 |
| French | Rice | Eurasian watermilfoil | 2009 |
| French | Wright | Eurasian watermilfoil | 2002 |
| Galpin | Hennepin | Eurasian watermilfoil | 2001 |
| Games | Kandiyohi | Eurasian watermilfoil | 2014 |
| Geneva | Douglas | zebra mussel | 2009 |
| George | Anoka | Eurasian watermilfoil | 1998 |
| George | Olmsted | Eurasian watermilfoil | 1995 |
| George Watch | Anoka | Eurasian watermilfoil | 2016 |
| German | Le Sueur | Eurasian watermilfoil | 2004 |
| Gervais | Ramsey | Eurasian watermilfoil | 1995 |
| Gervais Mill Pond | Ramsey | Eurasian watermilfoil | 2014 |
| Gilbert | Crow Wing | zebra mussel | 2014 |
| Gilbert Pit | St. Louis | Eurasian watermilfoil | 1999 |
| Gilbert Pit (Ore-be-gone) | St. Louis | zebra mussel | 2013 |
| Gilchrist | Pope | Eurasian watermilfoil | 1997 |
| Goodview (Gravel Pit) | Winona | Eurasian watermilfoil | 2012 |
| Goose | Chisago | Eurasian watermilfoil | 2016 |
| Goose | Wright | Eurasian watermilfoil | 2000 |
| Granite | Wright | Eurasian watermilfoil | 2010 |
| Grass | Multiple (Stearns and Wright) | zebra mussel | 2015 |
| Gray’s Bay Outlet (wetland) | Hennepin | zebra mussel | 2010 |
| Green | Chisago | Eurasian watermilfoil | 1995 |
| Green | Isanti | Eurasian watermilfoil | 2000 |
| Green | Kandiyohi | Eurasian watermilfoil | 2000 |
| Green | Kandiyohi | zebra mussel | 2014 |
| Green’s | Cass | zebra mussel | 2010 |
| Greenwood | Cook | spiny waterflea | 2005 |
| Grill | Douglas | zebra mussel | 2014 |
| Grovers | Jackson | bighead carp | 2012 |
| Grovers | Jackson | silver carp | 2012 |
| Guernsey | Todd | zebra mussel | 2016 |
| Gull | Cass | zebra mussel | 2010 |
| Gull River | Cass | zebra mussel | 2010 |
| Gunflint | Cook | spiny waterflea | 2007 |
| Hale | Itasca | Eurasian watermilfoil | 2014 |
| Half-Moon | Crow Wing | zebra mussel | 2006 |
| Ham | Anoka | Eurasian watermilfoil | 2014 |
| Harriet | Hennepin | Eurasian watermilfoil | 1995 |
| Hart | Itasca | flowering rush | 2007 |
| Hiawatha | Hennepin | Eurasian watermilfoil | 1995 |
| Hiawatha | Hennepin | zebra mussel | 2010 |
| Holland | Dakota | Eurasian watermilfoil | 2009 |
| Holman | Itasca | flowering rush | 2009 |
| Hooper Creek from 500 feet upstream of State Highway 172 downstream to the Rainy River | Lake of the Woods | spiny waterflea | 2007 |
| Horseshoe | Le Sueur | flowering rush | 2014 |
| Horseshoe | St. Louis | Eurasian watermilfoil | 2000 |
| Horseshoe | Washington | Eurasian watermilfoil | 2013 |
| Houghtaling Creek downstream of the mouth of the unnamed creek draining Artlip Lake | Lake | zebra mussel | 2014 |
| Howard | Wright | Eurasian watermilfoil | 2004 |
| Hubert | Crow Wing | zebra mussel | 2016 |
| Hunt | Rice | Eurasian watermilfoil | 2015 |
| Huntington Mine | Crow Wing | zebra mussel | 2016 |
| Husen Marsh | Jackson | bighead carp | 2012 |
| Husen Marsh | Jackson | silver carp | 2012 |
| Hydes | Carver | Eurasian watermilfoil | 2014 |
| Ice | Itasca | Eurasian watermilfoil | 1999 |
| Ida | Becker | zebra mussel | 2015 |
| Ida | Douglas | zebra mussel | 2013 |
| Illinois | Jackson | bighead carp | 2012 |
| Illinois | Jackson | silver carp | 2012 |
| Independence | Hennepin | Eurasian watermilfoil | 1995 |
| Independence | Hennepin | zebra mussel | 2014 |
| Indian | Nobles | bighead carp | 2012 |
| Indian | Nobles | silver carp | 2012 |
| Indian | Wright | Eurasian watermilfoil | 2004 |
| Irene | Douglas | zebra mussel | 2012 |
| Iron | St. Louis | spiny waterflea | 2014 |
| Island | Crow Wing | zebra mussel | 2014 |
| Island | Ramsey | Eurasian watermilfoil | 1995 |
| Island | St. Louis | spiny waterflea | 1995 |
| Jane | Washington | Eurasian watermilfoil | 2012 |
| Jefferson | Le Sueur | Eurasian watermilfoil | 2015 |
| Jessie | Douglas | zebra mussel | 2009 |
| Johanna | Ramsey | Eurasian watermilfoil | 2016 |
| John | Wright | Eurasian watermilfoil | 2011 |
| John | Wright | zebra mussel | 2015 |
| Johnson Creek from the Rainy River upstream to 500 feet beyond the first road crossing | Lake of the Woods | spiny waterflea | 2007 |
| Jonathan (Upper Lake Grace) | Carver | Eurasian watermilfoil | 2016 |
| Josephine | Ramsey | Eurasian watermilfoil | 2013 |
| Judicial Ditch No. 35 from S14, T102N, R36W to Rush | Jackson | bighead carp | 2012 |
| Judicial Ditch No. 35 from S14, T102N, R36W to Rush | Jackson | silver carp | 2012 |
| Judicial Ditch No. 8 between Clear and Loon | Jackson | bighead carp | 2012 |
| Judicial Ditch No. 8 between Clear and Loon | Jackson | silver carp | 2012 |
| Judicial ditches connected to designated infested waters in Jackson County | Jackson | bighead carp | 2012 |
| Judicial ditches connected to designated infested waters in Jackson County | Jackson | silver carp | 2012 |
| Kabetogama | St. Louis | spiny waterflea | 2007 |
| Keller | Dakota | Eurasian watermilfoil | 2006 |
| Keller | Ramsey | Eurasian watermilfoil | 1995 |
| Kelser’s Pond | Carver | Eurasian watermilfoil | 2009 |
| Kerbs | Otter Tail | zebra mussel | 2013 |
| Kimball | Crow Wing | Eurasian watermilfoil | 2007 |
| Kimball | Crow Wing | zebra mussel | 2016 |
| Kitchi | Beltrami | zebra mussel | 2014 |
| Knife | Kanabec | Eurasian watermilfoil | 1995 |
| Knife | Kanabec | faucet snail | 2016 |
| Kohlmans | Ramsey | Eurasian watermilfoil | 2000 |
| Koronis (includes Mud) | Stearns | starry stonewort | 2015 |
| Lac La Croix | St. Louis | spiny waterflea | 2009 |
| Lac Lavon | Dakota | brittle naiad | 2007 |
| Lac Lavon | Dakota | Eurasian watermilfoil | 1995 |
| Lac qui Parle | Multiple (Lac qui Parle, Chippewa, Swift) | zebra mussel | 2016 |
| Lake of the Isles | Hennepin | Eurasian watermilfoil | 1995 |
| Lake of the Woods, including the portions of Zipple Bay to Zipple Creek in S9 and S10, T162N, R33W, and to Bostic Creek at County Highway 8 | Lake of the Woods | spiny waterflea | 2007 |
| Lakewood Cemetery | Hennepin | Eurasian watermilfoil | 2007 |
| Langton | Ramsey | Eurasian watermilfoil | 2008 |
| Latoka | Douglas | zebra mussel | 2014 |
| Le Homme Dieu | Douglas | Eurasian watermilfoil | 2012 |
| Le Homme Dieu | Douglas | zebra mussel | 2009 |
| Leech | Cass | zebra mussel | 2016 |
| Leech | Cass | Eurasian watermilfoil | 2005 |
| Leech Lake River between Mud Lake and Mississippi River | Cass | faucet snail | 2010 |
| Libbs | Hennepin | Eurasian watermilfoil | 1995 |
| Libbs | Hennepin | zebra mussel | 2012 |
| Lida (North and South) | Otter Tail | zebra mussel | 2014 |
| Lily | Dakota | Eurasian watermilfoil | 2016 |
| Linwood | Anoka | Eurasian watermilfoil | 2014 |
| Little Birch | Todd | Eurasian watermilfoil | 2004 |
| Little Birch | Todd | zebra mussel | 2016 |
| Little Cut Foot | Itasca | faucet snail | 2009 |
| Little Cut Foot | Itasca | zebra mussel | 2013 |
| Little Elk | Sherburne | Eurasian watermilfoil | 2004 |
| Little Fork River, from 100 feet upstream of Highway 11 downstream to the Rainy River | Koochiching | spiny waterflea | 2007 |
| Little Hanging Horn | Carlton | Eurasian watermilfoil | 2016 |
| Little Horseshoe | Chisago | Eurasian watermilfoil | 2015 |
| Little John | Cook | spiny waterflea | 2009 |
| Little Long | Hennepin | Eurasian watermilfoil | 1995 |
| Little Mary | Wright | Eurasian watermilfoil | 2007 |
| Little McDonald | Otter Tail | zebra mussel | 2013 |
| Little Mud | Meeker | Eurasian watermilfoil | 2009 |
| Little Osakis | Todd | zebra mussel | 2016 |
| Little Pelican | Otter Tail | zebra mussel | 2009 |
| Little Pine | Crow Wing | zebra mussel | 2014 |
| Little Rabbit | Crow Wing | zebra mussel | 2006 |
| Little Rice | Beltrami | zebra mussel | 2014 |
| Little Rock | Benton | zebra mussel | 2006 |
| Little Rock Lake Channel | Benton | zebra mussel | 2006 |
| Little Sand | Itasca | zebra mussel | 2013 |
| Little Sioux River and its tributaries | Jackson | bighead carp | 2012 |
| Little Sioux River and its tributaries | Jackson | silver carp | 2012 |
| Little Spirit | Jackson | bighead carp | 2012 |
| Little Spirit | Jackson | silver carp | 2012 |
| Little Vermilion | St. Louis | spiny waterflea | 2007 |
| Little Waverly | Wright | Eurasian watermilfoil | 1995 |
| Little Winnibigoshish | Itasca | faucet snail | 2010 |
| Little Winnibigoshish | Itasca | zebra mussel | 2013 |
| Lizzie | Otter Tail | zebra mussel | 2009 |
| Lobster | Douglas | zebra mussel | 2014 |
| Locke | Wright | Eurasian watermilfoil | 2011 |
| Loeb | Ramsey | Eurasian watermilfoil | 2004 |
| Long | Hennepin | Eurasian watermilfoil | 1995 |
| Long | Isanti | Eurasian watermilfoil | 2007 |
| Long | Ramsey | Eurasian watermilfoil | 2015 |
| Long | Washington | Eurasian watermilfoil | 2006 |
| Long | Washington | Eurasian watermilfoil | 2008 |
| Long | Washington | Eurasian watermilfoil | 2009 |
| Long | Washington | Eurasian watermilfoil | 2016 |
| Long (Tame Fish) | Crow Wing | Eurasian watermilfoil | 2010 |
| Long Lake | Douglas | zebra mussel | 2014 |
| Long Prairie River, including 500 feet upstream into its tributaries | Multiple (Cass, Douglas, Morrison and Todd) | zebra mussel | 2009 |
| Loon | Jackson | bighead carp | 2012 |
| Loon | Jackson | silver carp | 2012 |
| Loon | St. Louis | spiny waterflea | 2009 |
| Loon (Island-Loon) | Crow Wing | zebra mussel | 2014 |
| Loon Creek between Loon and Spirit | Jackson | bighead carp | 2012 |
| Loon Creek between Loon and Spirit | Jackson | silver carp | 2012 |
| Lottie (Taylor) | Douglas | zebra mussel | 2011 |
| Lotus | Carver | Eurasian watermilfoil | 1995 |
| Louise | Douglas | zebra mussel | 2014 |
| Louise Mine Pit | Crow Wing | Eurasian watermilfoil | 2009 |
| Love | Crow Wing | zebra mussel | 2010 |
| Lower Cullen | Crow Wing | zebra mussel | 2016 |
| Lower Hay | Crow Wing | zebra mussel | 2014 |
| Lower Mission | Crow Wing | Eurasian watermilfoil | 2008 |
| Lower Prior | Scott | Eurasian watermilfoil | 1995 |
| Lower Prior | Scott | zebra mussel | 2009 |
| Lower Spunk | Stearns | Eurasian watermilfoil | 2014 |
| Lower Twin | Wadena | faucet snail | 2009 |
| Lower Watab | Stearns | zebra mussel | 2014 |
| Lucy | Carver | Eurasian watermilfoil | 2007 |
| Lura | Blue Earth | Eurasian watermilfoil | 2005 |
| Madison | Blue Earth | Eurasian watermilfoil | 2010 |
| Magda | Hennepin | Eurasian watermilfoil | 2015 |
| Mangan Mine Pit | Crow Wing | zebra mussel | 2016 |
| Manuella | Meeker | Eurasian watermilfoil | 2006 |
| Maple | Douglas | zebra mussel | 2014 |
| Maple | Wright | Eurasian watermilfoil | 2007 |
| Maple (Upper Maple) | Wright | flowering rush | 2015 |
| Margaret | Cass | zebra mussel | 2010 |
| Marion | Dakota | Eurasian watermilfoil | 1998 |
| Marshan | Anoka | Eurasian watermilfoil | 2010 |
| Mary | Douglas | zebra mussel | 2014 |
| Mary | Wright | Eurasian watermilfoil | 1997 |
| Maud | Becker | zebra mussel | 2016 |
| Mazaska | Rice | Eurasian watermilfoil | 2010 |
| McCarron | Ramsey | Eurasian watermilfoil | 2000 |
| McColl | Scott | Eurasian watermilfoil | 2009 |
| McCormack | St. Louis | Eurasian watermilfoil | 2013 |
| McCraney | Mahnomen | faucet snail | 2015 |
| McDonough | Dakota | Eurasian watermilfoil | 2016 |
| McFarland | Cook | spiny waterflea | 2005 |
| McKinney | Itasca | Eurasian watermilfoil | 1999 |
| McMahon | Scott | Eurasian watermilfoil | 2007 |
| Meadowbrook | Hennepin | zebra mussel | 2010 |
| Medicine | Hennepin | Eurasian watermilfoil | 1995 |
| Melissa | Becker | flowering rush | 2007 |
| Melissa | Becker | zebra mussel | 2014 |
| Middle Jefferson (DOW 40-0092-04) | Le Sueur | Eurasian watermilfoil | 2010 |
| Middle Spunk | Stearns | Eurasian watermilfoil | 2014 |
| Mill | Becker | flowering rush | 2009 |
| Mill | Douglas | zebra mussel | 2014 |
| Mill Pond | Becker | zebra mussel | 2014 |
| Mill Pond | Otter Tail | zebra mussel | 2012 |
| Mille Lacs | Mille Lacs | Eurasian watermilfoil | 1999 |
| Mille Lacs | Mille Lacs | spiny waterflea | 2009 |
| Mille Lacs | Mille Lacs | zebra mussel | 2006 |
| Mille Lacs tributaries from their mouths upstream to the posted boundaries | Multiple (Aitkin, Crow Wing and Mille Lacs) | Eurasian watermilfoil | 1999 |
| Mille Lacs tributaries from their mouths upstream to the posted boundaries | Multiple (Aitkin, Crow Wing and Mille Lacs) | spiny waterflea | 2009 |
| Mille Lacs tributaries from their mouths upstream to the posted boundaries | Multiple (Aitkin, Crow Wing and Mille Lacs) | zebra mussel | 2006 |
| Miller | Crow Wing | zebra mussel | 2006 |
| Miller Creek from 500 feet upstream of State Highway 172 downstream to the Rainy River | Lake of the Woods | spiny waterflea | 2007 |
| Miltona | Douglas | zebra mussel | 2013 |
| Mina | Douglas | zebra mussel | 2014 |
| Mink | Wright | Eurasian watermilfoil | 2004 |
| Mink | Wright | Eurasian watermilfoil | 2014 |
| Minnehaha Creek | Hennepin | Eurasian watermilfoil | 1995 |
| Minnehaha Creek | Hennepin | flowering rush | 2009 |
| Minnehaha Creek between Minnetonka and Nokomis | Hennepin | zebra mussel | 2010 |
| Minnehaha Marsh | Hennepin | zebra mussel | 2010 |
| Minnesota River pool behind Granite Falls, MN dam | Yellow Medicine | zebra mussel | 2016 |
| Minnetonka | Hennepin | Eurasian watermilfoil | 1995 |
| Minnetonka | Hennepin | flowering rush | 2009 |
| Minnetonka | Hennepin | zebra mussel | 2010 |
| Minnewashta | Carver | Eurasian watermilfoil | 1995 |
| Minnewashta | Carver | zebra mussel | 2016 |
| Minnewaska | Pope | Eurasian watermilfoil | 1998 |
| Minnewaska | Pope | zebra mussel | 2012 |
| Minnie-Belle | Meeker | Eurasian watermilfoil | 2010 |
| Mississippi River between Wolf, Andrusia, and Cass | Multiple (Beltrami, Cass and Itasca) | zebra mussel | 2014 |
| Mississippi River from the Knutson Dam downstream to Little Winnibigoshish Lake (31-0850) | Multiple (Beltrami, Cass and Itasca) | zebra mussel | 2013 |
| Mississippi River, from 500 feet upstream of the mouth of the Pine River in Crow Wing County to Upper St. Anthony Falls, including 500 feet upstream into its tributaries | Multiple | zebra mussel | 2006 |
| Mississippi River, from the Knutson Dam downstream to Lake Winnibigoshish, and between Lake Winnibigoshish and the confluence of the main channel of the Mississippi River and White Oak Lake branch of the Mississippi River in the SE 1/4 of the NW 1/4 of Section 13, Township 144N, Range 25W, including 500 feet upstream into its tributaries | Multiple (Beltrami, Cass and Itasca) | faucet snail | 2009 |
| Mississippi River, Pool 1 | Multiple | bighead carp | 2015 |
| Mississippi River, Pool 1 | Multiple | Eurasian watermilfoil | 1995 |
| Mississippi River, Pool 1 | Multiple | grass carp | 2015 |
| Mississippi River, Pool 1 | Multiple | silver carp | 2015 |
| Mississippi River, Pool 1, including 500 feet upstream into its tributaries | Multiple | zebra mussel | 1995 |
| Mississippi River, Pool 2 | Multiple | bighead carp | 2012 |
| Mississippi River, Pool 2 | Multiple | Eurasian watermilfoil | 1995 |
| Mississippi River, Pool 2 | Multiple | flowering rush | 2015 |
| Mississippi River, Pool 2 | Multiple | grass carp | 2015 |
| Mississippi River, Pool 2 | Multiple | silver carp | 2015 |
| Mississippi River, Pool 2, including 500 feet upstream into its tributaries | Multiple | zebra mussel | 1995 |
| Mississippi River, Pool 3 | Multiple | bighead carp | 2012 |
| Mississippi River, Pool 3 | Multiple | Eurasian watermilfoil | 1995 |
| Mississippi River, Pool 3 | Multiple | grass carp | 2015 |
| Mississippi River, Pool 3 | Multiple | silver carp | 2012 |
| Mississippi River, Pool 3, including 500 feet upstream into its tributaries | Multiple | zebra mussel | 1995 |
| Mississippi River, Pool 4 | Multiple | bighead carp | 2012 |
| Mississippi River, Pool 4 | Multiple | Eurasian watermilfoil | 1995 |
| Mississippi River, Pool 4 | Multiple | faucet snail | 2016 |
| Mississippi River, Pool 4 | Multiple | grass carp | 2015 |
| Mississippi River, Pool 4 | Multiple | silver carp | 2012 |
| Mississippi River, Pool 4, including 500 feet upstream into its tributaries | Multiple | zebra mussel | 1995 |
| Mississippi River, Pool 5 | Multiple | bighead carp | 2012 |
| Mississippi River, Pool 5 | Multiple | Eurasian watermilfoil | 1995 |
| Mississippi River, Pool 5 | Multiple | faucet snail | 2016 |
| Mississippi River, Pool 5 | Multiple | grass carp | 2015 |
| Mississippi River, Pool 5 | Multiple | silver carp | 2012 |
| Mississippi River, Pool 5, including 500 feet upstream into its tributaries | Multiple | zebra mussel | 1995 |
| Mississippi River, Pool 5A | Multiple | bighead carp | 2012 |
| Mississippi River, Pool 5A | Multiple | Eurasian watermilfoil | 1995 |
| Mississippi River, Pool 5A | Multiple | faucet snail | 2016 |
| Mississippi River, Pool 5A | Multiple | grass carp | 2015 |
| Mississippi River, Pool 5A | Multiple | silver carp | 2012 |
| Mississippi River, Pool 5A, including 500 feet upstream into its tributaries | Multiple | zebra mussel | 1995 |
| Mississippi River, Pool 6 | Multiple | bighead carp | 2012 |
| Mississippi River, Pool 6 | Multiple | Eurasian watermilfoil | 1995 |
| Mississippi River, Pool 6 | Multiple | faucet snail | 2016 |
| Mississippi River, Pool 6 | Multiple | grass carp | 2015 |
| Mississippi River, Pool 6 | Multiple | silver carp | 2012 |
| Mississippi River, Pool 6, including 500 feet upstream into its tributaries | Multiple | zebra mussel | 1995 |
| Mississippi River, Pool 7 | Multiple | bighead carp | 2012 |
| Mississippi River, Pool 7 | Multiple | Eurasian watermilfoil | 1995 |
| Mississippi River, Pool 7 | Multiple | faucet snail | 2013 |
| Mississippi River, Pool 7 | Multiple | grass carp | 2015 |
| Mississippi River, Pool 7 | Multiple | silver carp | 2012 |
| Mississippi River, Pool 7, including 500 feet upstream into its tributaries | Multiple | zebra mussel | 1995 |
| Mississippi River, Pool 8 | Multiple | bighead carp | 2012 |
| Mississippi River, Pool 8 | Multiple | Eurasian watermilfoil | 1995 |
| Mississippi River, Pool 8 | Multiple | faucet snail | 2013 |
| Mississippi River, Pool 8 | Multiple | grass carp | 2015 |
| Mississippi River, Pool 8 | Multiple | silver carp | 2012 |
| Mississippi River, Pool 8, including 500 feet upstream into its tributaries | Multiple | zebra mussel | 1995 |
| Mississippi River, Pool 9 | Multiple | bighead carp | 2012 |
| Mississippi River, Pool 9 | Multiple | Eurasian watermilfoil | 1995 |
| Mississippi River, Pool 9 | Multiple | faucet snail | 2013 |
| Mississippi River, Pool 9 | Multiple | grass carp | 2015 |
| Mississippi River, Pool 9 | Multiple | silver carp | 2012 |
| Mississippi River, Pool 9, including 500 feet upstream into its tributaries | Multiple | zebra mussel | 1995 |
| Mitchell | Hennepin | Eurasian watermilfoil | 2004 |
| Mitchell | Sherburne | Eurasian watermilfoil | 2008 |
| Moose | Beltrami | starry stonewort | 2016 |
| Mud | St. Louis | zebra mussel | 2009 |
| Mud | Washington | Eurasian watermilfoil | 2007 |
| Muskrat | Becker | flowering rush | 2007 |
| Namakan | St. Louis | spiny waterflea | 2007 |
| Newton | Lake | spiny waterflea | 2014 |
| Niccum’s Pond (located in the NW 1/4 of the SW 1/4 of S10, T117N, R24W) | Hennepin | Eurasian watermilfoil | 1995 |
| Nisswa | Crow Wing | zebra mussel | 2010 |
| Nokomis | Hennepin | Eurasian watermilfoil | 1995 |
| Nokomis | Hennepin | zebra mussel | 2010 |
| North Center | Chisago | Eurasian watermilfoil | 2008 |
| North Fowl | Cook | spiny waterflea | 2010 |
| North Lindstrom | Chisago | Eurasian watermilfoil | 2006 |
| North Long | Crow Wing | zebra mussel | 2014 |
| North Twin | Itasca | Eurasian watermilfoil | 2000 |
| North Twin | Itasca | flowering rush | 2007 |
| North Twin | Wright | Eurasian watermilfoil | 2009 |
| North Union | Douglas | zebra mussel | 2011 |
| Norway | Kandiyohi | Eurasian watermilfoil | 2002 |
| O’Dowd | Scott | Eurasian watermilfoil | 2002 |
| O’Brien | Dakota | Eurasian watermilfoil | 2016 |
| Ogechie | Mille Lacs | zebra mussel | 2007 |
| Olson | Washington | Eurasian watermilfoil | 2009 |
| Onamia | Mille Lacs | zebra mussel | 2007 |
| Orwell Reservoir | Otter Tail | zebra mussel | 2013 |
| Osakis | Todd and Douglas | zebra mussel | 2016 |
| Oscar | Douglas | Eurasian watermilfoil | 1995 |
| Ossawinnamakee | Crow Wing | Eurasian watermilfoil | 2004 |
| Ossawinnamakee | Crow Wing | zebra mussel | 2004 |
| Otter | Anoka | Eurasian watermilfoil | 1995 |
| Otter | Stearns | zebra mussel | 2015 |
| Otter | Stearns | Eurasian watermilfoil | 2011 |
| Otter Tail | Otter Tail | zebra mussel | 2016 |
| Otter Tail River from 500 feet upstream of the confluence of the Pelican River downstream to the Bois De Sioux River, including 500 feet upstream into its tributaries | Multiple (Otter Tail and Wilkin) | zebra mussel | 2013 |
| Outlet Creek from Minnewaska to Emily | Pope | zebra mussel | 2012 |
| Owasso | Ramsey | Eurasian watermilfoil | 2000 |
| Parker’s | Hennepin | Eurasian watermilfoil | 1995 |
| Parley | Carver | Eurasian watermilfoil | 2001 |
| Paul | Otter Tail | zebra mussel | 2013 |
| Pearl | Jackson | bighead carp | 2012 |
| Pearl | Jackson | silver carp | 2012 |
| Peavey | Hennepin | Eurasian watermilfoil | 1999 |
| Peavey | Hennepin | zebra mussel | 2012 |
| Pelican | Crow Wing | zebra mussel | 2012 |
| Pelican | Otter Tail | zebra mussel | 2009 |
| Pelican | Wright | Eurasian watermilfoil | 2010 |
| Pelican Brook from the source at Ossawinnamakee to the Pine River | Crow Wing | zebra mussel | 2004 |
| Pelican River from Detroit to Muskrat | Becker | flowering rush | 2007 |
| Pelican River, from Bucks Mill Drive downstream to the Otter Tail River, including 500 feet upstream into its tributaries | Multiple (Becker and Otter Tail counties) | zebra mussel | 2009 |
| Peltier | Anoka | Eurasian watermilfoil | 2000 |
| Pepin | Multiple (Goodhue and Wabasha) | Eurasian watermilfoil | 2012 |
| Pepin | Multiple (Goodhue, Wabasha) | bighead carp | 2012 |
| Pepin | Multiple (Goodhue, Wabasha) | silver carp | 2012 |
| Pepin | Multiple (Goodhue, Wabasha) | zebra mussel | 2012 |
| Phalen | Ramsey | Eurasian watermilfoil | 1997 |
| Pickerel | Becker | flowering rush | 2015 |
| Pickerel | Becker | zebra mussel | 2014 |
| Pickerel | Crow Wing | zebra mussel | 2006 |
| Pierson | Carver | Eurasian watermilfoil | 1995 |
| Pig | Crow Wing | zebra mussel | 2014 |
| Pigeon River downstream of South Fowl | Cook | spiny waterflea | 2010 |
| Pigeon River from the Pigeon Dam Lake dam to Winnibigoshish | Itasca | faucet snail | 2009 |
| Pigeon River from the Pigeon Dam Lake dam to Winnibigoshish | Itasca | zebra mussel | 2013 |
| Pike | Scott | Eurasian watermilfoil | 2014 |
| Pike | St. Louis | zebra mussel | 2009 |
| Pike Bay | Cass | zebra mussel | 2014 |
| Pike River from Pike River Dam at CSAH 77 near Peyla to Vermilion | St. Louis | spiny waterflea | 2015 |
| Pine | Cook | spiny waterflea | 2005 |
| Pine River from the base of Cross Lake Dam to the confluence with Pelican Brook | Crow Wing | zebra mussel | 2014 |
| Pine River, from 500 feet upstream of the mouth of Pelican Brook to the Mississippi River, including 500 feet upstream into its tributaries | Crow Wing | zebra mussel | 2006 |
| Pleasant | Ramsey | Eurasian watermilfoil | 2010 |
| Pleasant | Ramsey | zebra mussel | 2007 |
| Pletz Marsh | Jackson | bighead carp | 2012 |
| Pletz Marsh | Jackson | silver carp | 2012 |
| Plum | Jackson | bighead carp | 2012 |
| Plum | Jackson | silver carp | 2012 |
| Douglas | zebra mussel | 2016 | |
| Pokegama | Pine | Eurasian watermilfoil | 2006 |
| Pond Six | Ramsey | Eurasian watermilfoil | 2002 |
| Pond Three | Ramsey | Eurasian watermilfoil | 2006 |
| Portage | Itasca | zebra mussel | 2013 |
| Portage (in Lebanon Hills Regional Park) | Dakota | Eurasian watermilfoil | 2016 |
| Powderhorn | Hennepin | Eurasian watermilfoil | 2008 |
| Powers | Washington | Eurasian watermilfoil | 1998 |
| Prairie | Otter Tail | zebra mussel | 2009 |
| Pug Hole | Beltrami | zebra mussel | 2014 |
| Pulaski | Wright | Eurasian watermilfoil | 1995 |
| Quarry | Dakota | Eurasian watermilfoil | 2007 |
| Quarry | Scott | Eurasian watermilfoil | 2016 |
| Rabbits | Itasca | faucet snail | 2009 |
| Rabbits | Itasca | zebra mussel | 2013 |
| Rainy | St. Louis | spiny waterflea | 2007 |
| Rainy River from Rainy Lake to Lake of the Woods | Multiple (Koochiching, Lake of the Woods) | spiny waterflea | 2007 |
| Ramsey | Wright | Eurasian watermilfoil | 2004 |
| Rapid River from 500 feet upstream of Highway 11 to Clementson Bay of the Rainy River | Lake of the Woods | spiny waterflea | 2007 |
| Raven | Itasca | faucet snail | 2009 |
| Raven | Itasca | zebra mussel | 2013 |
| Ravens Flowage (includes unnamed creek from S3, T146N, R29W to S11, T146N, R29W and Raven Creek downstream of Raven and Rabbit lakes to Lake Winnibigoshish) | Itasca | faucet snail | 2009 |
| Ravens Flowage (includes unnamed creek from S3, T146N, R29W, to S11, T146N, R29W, and Raven Creek downstream of Raven and Rabbit lakes to Lake Winnibigoshish) |
Itasca | zebra mussel | 2013 |
| Ray’s | Le Sueur | Eurasian watermilfoil | 2009 |
| Rebecca | Dakota | zebra mussel | 2009 |
| Rebecca | Hennepin | Eurasian watermilfoil | 1995 |
| Red River | Multiple (Clay, Kittson, Marshall, Norman, Polk and Wilkin) | zebra mussel | 2015 |
| Reeds | Waseca | Eurasian watermilfoil | 2014 |
| Reitz | Carver | Eurasian watermilfoil | 2008 |
| Reno | Pope | zebra mussel | 2014 |
| Rice | Crow Wing | zebra mussel | 2006 |
| Rice | Hennepin | Eurasian watermilfoil | 1997 |
| Rice | Itasca | zebra mussel | 2013 |
| Rice | Stearns | starry stonewort | 2016 |
| Riley | Carver | Eurasian watermilfoil | 1995 |
| Ripley | Meeker | Eurasian watermilfoil | 2004 |
| Ripple River between Bay and Tame Fish | Crow Wing | Eurasian watermilfoil | 2000 |
| Rock | Wright | Eurasian watermilfoil | 1995 |
| Roosevelt | Cass and Crow Wing | Eurasian watermilfoil | 2016 |
| Rose | Otter Tail | zebra mussel | 2011 |
| Rossier | Stearns | zebra mussel | 2014 |
| Round | Aitkin and Crow Wing | zebra mussel | 2016 |
| Round | Crow Wing | zebra mussel | 2010 |
| Round | Douglas | Eurasian watermilfoil | 2014 |
| Round | Hennepin | brittle naiad | 2010 |
| Round | Hennepin | Eurasian watermilfoil | 1996 |
| Round | Jackson | bighead carp | 2012 |
| Round | Jackson | silver carp | 2012 |
| Round | Ramsey | Eurasian watermilfoil | 1997 |
| Round | Wright | Eurasian watermilfoil | 2009 |
| Roy | Crow Wing | zebra mussel | 2010 |
| Royal (on the Royal River) | Cook | spiny waterflea | 2010 |
| Royal River between Little John and North Fowls | Cook | spiny waterflea | 2010 |
| Rum River including 500 feet upstream into its tributaries | Multiple (Anoka, Isanti, Mille Lacs and Sherburne) | zebra mussel | 2007 |
| Rusch | Otter Tail | zebra mussel | 2013 |
| Rush | Chisago | Eurasian watermilfoil | 1995 |
| Rush | Jackson | bighead carp | 2012 |
| Rush | Jackson | bighead carp | 2012 |
| Rush | Jackson | silver carp | 2012 |
| Rush | Jackson | silver carp | 2012 |
| Rush | Sherburne | Eurasian watermilfoil | 2014 |
| Rush-Hen | Crow Wing | zebra mussel | 2014 |
| Ruth | Crow Wing | Eurasian watermilfoil | 1997 |
| Ruth | Crow Wing | zebra mussel | 2015 |
| Saganaga | Cook | spiny waterflea | 2004 |
| Sallie | Becker | flowering rush | 2007 |
| Sallie | Becker | zebra mussel | 2016 |
| Sand | Itasca | zebra mussel | 2013 |
| Sand | Pine | Eurasian watermilfoil | 2004 |
| Sand Point | St. Louis | spiny waterflea | 2007 |
| Sarah | Hennepin | Eurasian watermilfoil | 1995 |
| Sauk | Todd | Eurasian watermilfoil | 1995 |
| Sauk | Todd | flowering rush | 2009 |
| Sauk River from Juergens to Sauk | Todd | flowering rush | 2007 |
| Sauk River from Osakis to Guernsey | Todd | zebra mussel | 2016 |
| Saunders | Hennepin | Eurasian watermilfoil | 2014 |
| Scandinavian | Pope | Eurasian watermilfoil | 2014 |
| Schmidt | Hennepin | Eurasian watermilfoil | 1995 |
| Schmidt | Wright | Eurasian watermilfoil | 2014 |
| Schultz | Dakota | Eurasian watermilfoil | 2000 |
| Schutz | Carver | Eurasian watermilfoil | 1995 |
| Second Crow Wing | Hubbard | faucet snail | 2011 |
| Sensky Creek from 500 feet upstream of State Highway 172 downstream to the Rainy River | Lake of the Woods | spiny waterflea | 2007 |
| Shagawa | St. Louis | spiny waterflea | 2014 |
| Shagawa River between Shagawa Lake and Fall Lake | Multiple (St. Louis and Lake) | spiny waterflea | 2014 |
| Shakopee | Mille Lacs | zebra mussel | 2007 |
| Shallow Pond | Pope | zebra mussel | 2012 |
| Shamineau | Morrison | Eurasian watermilfoil | 2012 |
| Shell River, from Upper Twin to Crow Wing River, including 500 feet upstream into its tributaries | Multiple (Hubbard and Wadena) | faucet snail | 2009 |
| Shields | Rice | Eurasian watermilfoil | 2015 |
| Signalness (also known as Mountain) | Pope | zebra mussel | 2016 |
| Silver | Ramsey | Eurasian watermilfoil | 1995 |
| Silver | Wright | Eurasian watermilfoil | 2011 |
| Silver Creek from 500 feet upstream of Highway 11 to the Rainy River | Lake of the Woods | spiny waterflea | 2007 |
| Skoglund Slough | Douglas | zebra mussel | 2014 |
| Skogman | Isanti | Eurasian watermilfoil | 2014 |
| Skunk | Jackson | bighead carp | 2012 |
| Skunk | Jackson | silver carp | 2012 |
| Snail | Ramsey | Eurasian watermilfoil | 2000 |
| Snake River between Pokegama and Cross, including 500 feet upstream into its tributaries | Pine | Eurasian watermilfoil | 2005 |
| Snelling | Hennepin | Eurasian watermilfoil | 2006 |
| Somers | Wright | Eurasian watermilfoil | 2014 |
| South Center | Chisago | Eurasian watermilfoil | 2009 |
| South Coon | Anoka | Eurasian watermilfoil | 2010 |
| South Fowl | Cook | spiny waterflea | 2010 |
| South Lindstrom | Chisago | Eurasian watermilfoil | 2010 |
| South Twin | Itasca | Eurasian watermilfoil | 2016 |
| South Twin | Itasca | flowering rush | 2007 |
| Spectacle | Isanti | Eurasian watermilfoil | 2007 |
| Spider | Cass | zebra mussel | 2010 |
| Spider | Itasca | flowering rush | 2014 |
| Spirit | Jackson | bighead carp | 2012 |
| Spirit | Jackson | silver carp | 2012 |
| Spoon Creek between Keller and Phalen lakes | Ramsey | Eurasian watermilfoil | 1999 |
| Sprague | Rice | flowering rush | 2014 |
| St. Anna | Stearns | Eurasian watermilfoil | 2014 |
| St. Croix River | Washington | Eurasian watermilfoil | 1995 |
| St. Croix River downstream of the dam at Taylors Falls | Multiple (Chisago and Washington) | bighead carp | 2012 |
| St. Croix River downstream of the dam at Taylors Falls | Multiple (Chisago and Washington) | grass carp | 2015 |
| St. Croix River downstream of the dam at Taylors Falls | Multiple (Chisago and Washington) | silver carp | 2012 |
| St. Croix River downstream of the St.Croix Boomsite Recreation Area at river mile 25.4 | Washington | zebra mussel | 2001 |
| St. Louis River downstream of the Cloquet River | Multiple (Carlton and St. Louis) | spiny waterflea | 1995 |
| St. Louis River downstream of the Fond du Lac dam | Multiple (Carlton and St. Louis) | faucet snail | 2014 |
| St. Louis River downstream of the Fond du Lac dam | Multiple (Carlton and St. Louis) | New Zealand mud snail | 2007 |
| St. Louis River downstream of the Fond du Lac dam | Multiple (Carlton and St. Louis) | round goby | 1996 |
| St. Louis River downstream of the Fond du Lac dam | Multiple (Carlton and St. Louis) | ruffe | 1995 |
| St. Louis River downstream of the Fond du Lac dam | Multiple (Carlton and St. Louis) | VHS | 2010 |
| St. Louis River downstream of the Fond du Lac dam | Multiple (Carlton and St. Louis) | white perch | 1995 |
| St. Louis River downstream of the mouth of the White Pine River in St. Louis County | Multiple (Carlton and St. Louis) | zebra mussel | 1995 |
| Staring | Hennepin | brittle naiad | 2015 |
| Staring | Hennepin | Eurasian watermilfoil | 2015 |
| Steiger | Carver | Eurasian watermilfoil | 2002 |
| Stella | Meeker | Eurasian watermilfoil | 1999 |
| Stella | Meeker | zebra mussel | 2015 |
| Stone | Carver | Eurasian watermilfoil | 1995 |
| Stoney (Stony) | Douglas | zebra mussel | 2011 |
| Sturgeon | Pine | Eurasian watermilfoil | 2008 |
| Sucker | Ramsey | Eurasian watermilfoil | 1996 |
| Sucker | Ramsey | zebra mussel | 2007 |
| Sugar | Itasca | faucet snail | 2009 |
| Sugar | Itasca | zebra mussel | 2013 |
| Sugar | Wright | Eurasian watermilfoil | 1995 |
| Sunset | Washington | Eurasian watermilfoil | 2001 |
| Sunset Pond | Dakota | Eurasian watermilfoil | 2004 |
| Superior | Multiple (Cook, Lake and St. Louis) | Eurasian watermilfoil | 2007 |
| Superior | Multiple (Cook, Lake and St. Louis) | faucet snail | 2014 |
| Superior | Multiple (Cook, Lake and St. Louis) | New Zealand mud snail | 2007 |
| Superior | Multiple (Cook, Lake and St. Louis) | round goby | 1996 |
| Superior | Multiple (Cook, Lake and St. Louis) | spiny waterflea | 1995 |
| Superior | Multiple (Cook, Lake and St. Louis) | VHS | 2010 |
| Superior | Multiple (Cook, Lake and St. Louis) | white perch | 1995 |
| Superior | Multiple (Cook, Lake and St. Louis) | zebra mussel | 1995 |
| Superior | Multiple (Cook, Lake, St. Louis) | ruffe | 1995 |
| Superior Tributaries,either the entire length of the tributary or, on tributaries that have been posted, upstream to the posted boundaries | Multiple (Cook, Lake and St. Louis) | round goby | 2010 |
| Superior Tributaries,either the entire length of the tributary or, on tributaries that have been posted, upstream to the posted boundaries | Multiple (Cook, Lake and St. Louis) | ruffe | 2010 |
| Superior Tributaries,either the entire length of the tributary or, on tributaries that have been posted, upstream to the posted boundaries | Multiple (Cook, Lake and St. Louis) | VHS | 2010 |
| Superior Tributaries,either the entire length of the tributary or, on tributaries that have been posted, upstream to the posted boundaries | Multiple (Cook, Lake and St. Louis) | white perch | 2010 |
| Susan | Carver | Eurasian watermilfoil | 2005 |
| Swan (located in the NW 1/4 of the NW 1/4 of S4, T117N, R23W) | Hennepin | Eurasian watermilfoil | 1995 |
| Swede | Carver | Eurasian watermilfoil | 2008 |
| Swede’s Bay (DOW 40-0092-03) | Le Sueur | Eurasian watermilfoil | 2015 |
| Swift Ditch from 500 feet upstream of Highway 12 downstream to Lake of the Woods | Roseau | spiny waterflea | 2011 |
| Sybil | Otter Tail | zebra mussel | 2016 |
| Sylvia | Stearns | Eurasian watermilfoil | 2011 |
| Sylvia | Stearns | zebra mussel | 2015 |
| Tanager | Hennepin | Eurasian watermilfoil | 1999 |
| Tanager | Hennepin | zebra mussel | 2012 |
| Tetonka | Le Sueur | flowering rush | 2009 |
| Tetonka | Le Sueur | Eurasian watermilfoil | 2016 |
| Third River downstream of Highway 33 | Itasca | faucet snail | 2009 |
| Third River downstream of Highway 33 | Itasca | zebra mussel | 2013 |
| Third River Flowage (part of Lake Winnibigoshish) | Itasca | faucet snail | 2009 |
| Third River Flowage (part of Lake Winnibigoshish) | Itasca | zebra mussel | 2013 |
| Thole | Scott | Eurasian watermilfoil | 2002 |
| Thomas | Dakota | Eurasian watermilfoil | 2012 |
| Threemile Creek between Otter and Clearwater | Stearns | zebra mussel | 2015 |
| Tilde | Clay | red swamp crayfish | 2016 |
| Town Line | Cass | Eurasian watermilfoil | 2009 |
| Trout | Cook | spiny waterflea | 2013 |
| Trout | Itasca | flowering rush | 2015 |
| Turtle | Douglas | zebra mussel | 2014 |
| Turtle | Ramsey | Eurasian watermilfoil | 2000 |
| Turtle (Big Turtle) | Beltrami | starry stonewort | 2016 |
| Twin | Hennepin | Eurasian watermilfoil | 2007 |
| Twin Lakes | Dakota | Eurasian watermilfoil | 1997 |
| Union | Polk | Eurasian watermilfoil | 2007 |
| Unnamed | Douglas | zebra mussel | 2014 |
| Unnamed | Douglas | zebra mussel | 2014 |
| Unnamed | Multiple (Stearns and Wright) | zebra mussel | 2015 |
| Unnamed (Grace) | Carver | Eurasian watermilfoil | 2016 |
| Unnamed (in McGroarty Park) | Dakota | Eurasian watermilfoil | 2016 |
| Unnamed creek between Anderson’s Marsh and Pearl | Jackson | bighead carp | 2012 |
| Unnamed creek between Anderson’s Marsh and Pearl | Jackson | silver carp | 2012 |
| Unnamed creek between Crooked Lake and Houghtaling Creek | Lake | zebra mussel | 2014 |
| Unnamed creek between Pearl and Loon | Jackson | bighead carp | 2012 |
| Unnamed creek between Pearl and Loon | Jackson | silver carp | 2012 |
| Unnamed creek between Rush and Anderson’s Marsh | Jackson | bighead carp | 2012 |
| Unnamed creek between Rush and Anderson’s Marsh | Jackson | silver carp | 2012 |
| Unnamed gravel pit (located in S 1/2 of S14, T41N, R21W) | Pine | Eurasian watermilfoil | 2005 |
| Unnamed gravel pit (located in S16, T108, R20W) | Steele | Eurasian watermilfoil | 2012 |
| Unnamed lake | Dakota | flowering rush | 2007 |
| Unnamed lake | Jackson | bighead carp | 2012 |
| Unnamed lake | Jackson | bighead carp | 2012 |
| Unnamed lake | Jackson | bighead carp | 2012 |
| Unnamed lake | Jackson | silver carp | 2012 |
| Unnamed lake | Jackson | silver carp | 2012 |
| Unnamed lake | Jackson | silver carp | 2012 |
| Unnamed Lake in Springbrook Nature Center | Anoka | Eurasian watermilfoil | 1995 |
| Unnamed lake on Little Sioux River | Jackson | bighead carp | 2012 |
| Unnamed lake on Little Sioux River | Jackson | bighead carp | 2012 |
| Unnamed lake on Little Sioux River | Jackson | silver carp | 2012 |
| Unnamed lake on Little Sioux River | Jackson | silver carp | 2012 |
| Unnamed pond | Pope | zebra mussel | 2012 |
| Unnamed pond (Black Tern Pond) | Ramsey | Eurasian watermilfoil | 2016 |
| Unnamed pond (Valley Pond) in Valley Park | Dakota | Eurasian watermilfoil | 2006 |
| Unnamed pond in the NW 1/4 of S14, T117, R22 | Hennepin | zebra mussel | 2010 |
| Unnamed pond located in S14 and S15, T142, R39W | Becker | faucet snail | 2012 |
| Unnamed pond located in S15 T142N, R39W | Becker | faucet snail | 2012 |
| Unnamed pond located in SE 1/4 of SW 1/4 of S14, T142, R39W | Becker | faucet snail | 2013 |
| Unnamed pond located in SW 1/4 of SE 1/4 of S15, T142, R39W | Becker | faucet snail | 2013 |
| Unnamed pond located in the NE 1/4 of NW 1/4 of S22, T142N, R39W | Becker | faucet snail | 2012 |
| Unnamed pond located in the NE 1/4 of SE 1/4 of S15, T142N, R39W | Becker | faucet snail | 2012 |
| Unnamed pond located in the NW 1/4 of NE 1/4 of S22, T142N, R39W | Becker | faucet snail | 2012 |
| Unnamed pond located in the SE 1/4 of the SW 1/4 of S15, T142N, R39W | Becker | faucet snail | 2012 |
| Unnamed pond located in the SW 1/4 of SW 1/4 of S14, T142N, R39W | Becker | faucet snail | 2012 |
| Unnamed pond north of East Spirit and south of County Road 4 (located in the NE 1/4 of the SW 1/4 of S4, T136N, R41W) | Otter Tail | zebra mussel | 2016 |
| Unnamed river from the outlet of Irene (21-0076) to Miltona (21-0083) | Douglas | zebra mussel | 2013 |
| Unnamed river from the outlet of Lake Miltona (21-0083) to Ida (21-0123) | Douglas | zebra mussel | 2013 |
| Unnamed stream connecting Big Rice, Little Rice and Kitchi Lakes | Beltrami | zebra mussel | 2014 |
| Unnamed stream connecting Kitchi, Pug Hole and Cass Lakes | Beltrami | zebra mussel | 2014 |
| Unnamed stream connecting Pike Bay and Cass Lakes | Cass | zebra mussel | 2014 |
| Unnamed wetland | Crow Wing | zebra mussel | 2006 |
| Unnamed wetland | Hennepin | Eurasian watermilfoil | 2000 |
| Unnamed wetland | Scott | Eurasian watermilfoil | 2009 |
| Unnamed wetland (Heine Pond) | Dakota | Eurasian watermilfoil | 2010 |
| Unnamed wetland (located in the NE 1/4 of the NE 1/4 of S33, T135N, R27W) | Crow Wing | zebra mussel | 2006 |
| Unnamed wetland (located in the NE 1/4 of the SW 1/4 of S3, T135N, R27W) | Crow Wing | zebra mussel | 2006 |
| Unnamed wetland (located in the NE 1/4 of the NE 1/4 of S33, T31N, R22W) | Anoka | flowering rush | 2007 |
| Unnamed wetland (located in the NE 1/4 of the SE 1/4 of S2, T46N, R30W) | Crow Wing | zebra mussel | 2006 |
| Unnamed wetland (located in the NW 1/4 of the NE 1/4 of S33, T46N, R30W) | Crow Wing | zebra mussel | 2006 |
| Unnamed wetland (Purgatory wetland) | Hennepin | brittle naiad | 2014 |
| Unnamed wetland along Clearwater River | Stearns | Eurasian watermilfoil | 1999 |
| Unnamed wetland connected to Paul Lake (56-0335) | Otter Tail | zebra mussel | 2013 |
| Unnamed wetland in the E 1/2 of S13, T117N R22W | Hennepin | zebra mussel | 2010 |
| Unnamed wetland in the NE 1/4 of S20 T117N, R21W | Hennepin | zebra mussel | 2010 |
| Unnamed wetland in the NW 1/4 of S19, T117N, R21W | Hennepin | zebra mussel | 2010 |
| Unnamed wetland in the SE 1/4 of S11 and NE 1/4 of S14 T117N R22W | Hennepin | zebra mussel | 2010 |
| Unnamed wetland in the SW 1/4 of S20, T117N, R21W | Hennepin | zebra mussel | 2010 |
| Unnamed wetland located in the NE 1/4 of the SW 1/4 of S2, T46N, R30W) | Crow Wing | zebra mussel | 2006 |
| Unnamed wetland located in S 16, T124N, R39W | Pope | zebra mussel | 2012 |
| Unnamed wetland located in S 20 and 21, T124N, R39W | Pope | zebra mussel | 2012 |
| Unnamed wetland located in S 20, T124N, R39W | Pope | zebra mussel | 2012 |
| Unnamed wetland located in S 9 and 16, T124N, R39W | Pope | zebra mussel | 2012 |
| Unnamed wetland located in S2, T143N, R43W | Norman | faucet snail | 2013 |
| Unnamed wetland NW 1/4 of S18 T117N, R21W | Hennepin | zebra mussel | 2010 |
| Upper Gull | Cass | zebra mussel | 2010 |
| Upper Hay | Crow Wing | zebra mussel | 2014 |
| Upper Mission | Crow Wing | Eurasian watermilfoil | 2008 |
| Upper Prior | Scott | Eurasian watermilfoil | 2000 |
| Upper Prior | Scott | zebra mussel | 2009 |
| Upper Red | Beltrami | starry stonewort | 2016 |
| Upper Sakatah | Le Sueur | flowering rush | 2009 |
| Upper Twin | Hubbard | faucet snail | 2009 |
| Vadnais | Ramsey | zebra mussel | 2007 |
| Vadnais | Ramsey | Eurasian watermilfoil | 1995 |
| Venstrom | Otter Tail | zebra mussel | 2014 |
| Vermilion | St. Louis | spiny waterflea | 2015 |
| Vermilion River from Vermilion to Crane | St. Louis | spiny waterflea | 2015 |
| Victoria | Douglas | zebra mussel | 2009 |
| Virginia | Carver | Eurasian watermilfoil | 1995 |
| Virginia | Carver | zebra mussel | 2014 |
| Wabasso | Ramsey | Eurasian watermilfoil | 1995 |
| Wabonica Creek from 500 feet upstream of State Highway 172 downstream to the Rainy River | Lake of the Woods | spiny waterflea | 2007 |
| Waconia | Carver | Eurasian watermilfoil | 1995 |
| Waconia | Carver | zebra mussel | 2014 |
| Warroad River from 500 feet upstream of Highway 11 downstream to Lake of the Woods | Roseau | spiny waterflea | 2007 |
| Washburn | Cass | Eurasian watermilfoil | 2009 |
| Washington | Meeker | Eurasian watermilfoil | 1999 |
| Washington | Meeker | zebra mussel | 2015 |
| Wasserman | Carver | Eurasian watermilfoil | 2001 |
| Watab Lake | Stearns | zebra mussel | 2014 |
| Watab River from Watab Lake to the Mississippi River | Stearns | zebra mussel | 2014 |
| Waverly | Wright | Eurasian watermilfoil | 1995 |
| Weaver | Hennepin | Eurasian watermilfoil | 2013 |
| Weigand | Multiple (Stearns and Wright) | zebra mussel | 2015 |
| Weigand | Wright | Eurasian watermilfoil | 1999 |
| Wells | Rice | flowering rush | 2007 |
| West Battle | Otter Tail | zebra mussel | 2016 |
| West Fork Little Sioux River and its tributaries | Jackson | bighead carp | 2012 |
| West Fork Little Sioux River and its tributaries | Jackson | silver carp | 2012 |
| West Jefferson (DOW 40-0092-02) | Le Sueur | Eurasian watermilfoil | 2015 |
| West Sylvia | Wright | Eurasian watermilfoil | 2008 |
| West Sylvia | Wright | starry stonewort | 2016 |
| West Twin | St. Louis | spiny waterflea | 2010 |
| Whaletail | Hennepin | Eurasian watermilfoil | 1997 |
| White Bear | Washington | Eurasian watermilfoil | 1995 |
| White Bear | Washington | zebra mussel | 2014 |
| White Pine River | St. Louis | zebra mussel | 2009 |
| White Sand | Crow Wing | Eurasian watermilfoil | 2015 |
| Whitefish | Crow Wing | zebra mussel | 2014 |
| Wilmes | Washington | Eurasian watermilfoil | 2007 |
| Winnibigoshish | Cass | faucet snail | 2009 |
| Winnibigoshish | Cass | zebra mussel | 2013 |
| Winnibigoshish | Cass and Itasca | starry stonewort | 2016 |
| Winona | Winona | Eurasian watermilfoil | 2007 |
| Winter Road River from 500 feet upstream of State Highway 172 downstream to the Rainy River | Lake of the Woods | spiny waterflea | 2007 |
| Wirth | Hennepin | Eurasian watermilfoil | 1997 |
| Wolf | Beltrami | zebra mussel | 2014 |
| Wolf | Meeker | Eurasian watermilfoil | 2006 |
| Wolfe | Hennepin | Eurasian watermilfoil | 2004 |
| Zumbra | Carver | Eurasian watermilfoil | 1995 |
| Zumbro | Olmsted | zebra mussel | 2000 |
| Zumbro River downstream of Zumbro, including 500 feet upstream into its tributaries | Wabasha | zebra mussel | 2000 |